ResourceListTree.h

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#include "gecSpatialData.h"
#include "gecImage.h"
#include "gecObjectMap.h"
#include "gecTransformation.h"
#include <string>

/* Definition of loaded spatial data list entry */
// Note that a transformation is also classified as spatial data and will be
// added to this list despite the fact that spatial data resource list and
// transformation resource list are two separate lists.
class LoadedSpatialData {
public:
  gec::SpatialData* data;     // Pointer to spatial data in memory
  unsigned int      refCount; // Reference count - keep track of dependencies
};


/* Definition of spatial data resource entry */
// Spatial data item (e.g. MRI, CT, OBJMAP, etc) attributes
class SpatialDataItem {
  public:
  typedef std::map<std::string, std::string> AttributeList;
  std::string                directory;  // directory location of file
  std::string                filename;   // location of the data set
  gec::SpatialData::DataType datatype;   // e.g. IMAGE, OBJECTMAP, LANDMARK, etc
  AttributeList              attributes; // e.g. description, modality, scanner, etc
};


// Spatial data set (e.g. "01") attributes
class SpatialDataSet {
  public:
  typedef std::map<std::string, SpatialDataItem> SpatialDataItemList;
  std::string         name;       // e.g. "na01"
  std::string         identifier; // e.g. "hnnl001"
  std::string         race;       // e.g. "Martian"
  signed short        handedness; // e.g. +95
  unsigned short      age;        // e.g. 969
  enum Gender {M,F}   gender;     // e.g. Male
  SpatialDataItemList dataitem;   // [dataID (e.g. MRI, OBJMAP), dataitem]
};

// Spatial data resource list (top level resource table) attributes
class SpatialDataResourceList {
  public:
  typedef std::map<std::string, SpatialDataSet> SpatialDataSetList;
  std::string        path;    // path where the resource file is located
  std::string        id;      // e.g. "T1"
  std::string        title;   // e.g. "T1 database"
  SpatialDataSetList dataset; // [datasetID (e.g. "01"), dataset]
};

/* Definition of transformation data resource entry */
// Transformation item attributes
class TransformationItem {
  public:
  typedef std::vector<std::string>           FilenameList;
  typedef std::map<std::string, std::string> AttributeList;
  std::string   directory;  // e.g. "./data/na01_To_na02/"
  FilenameList  filename;   // location(s) of transformation file(s)
  AttributeList attributes; // additional attributes
};

// Transformation set (e.g. "SICLE_param1") attributes
class TransformationSet {
  public:
  typedef std::map<std::string, TransformationItem> TransformationItemList;
  std::string                             path;           // path where the resource file is located
  std::string                             name;           // e.g. SICLE, AIR, DEMONS, etc
  std::string                             parameter;      // e.g. ICC=0, TC=1, etc
  std::string                             description;    // algorithm and paramter description
  gec::Transformation::TransformationType format;         // e.g. DISPLACEMENT, AFFINE, SICLE, etc
  std::vector<float>                      scale;          // e.g. scale factor to convert to image space
  TransformationItemList                  transformation; // [source+target, transformation]
};